Neither irritable bowel syndrome nor food intolerance: the real reason behind chronic bloating

09/26/2025

Reading time: about 3 minutes

Endlessly gassy, uncomfortable bloating, bouts of diarrhea, abdominal pain, fatigue, or even unplanned weight loss? It may sound like the classic case of irritable bowel syndrome (IBS)—but don’t put all your eggs in that diagnosis basket just yet. Behind the scenes, another culprit lurks: SIBO, or Small Intestinal Bacterial Overgrowth. SIBO bears a striking resemblance to IBS, fooling even the most seasoned of symptom-checkers, yet it’s its own beast entirely.

What Is SIBO, Really?

SIBO arises when bacteria start an unruly party in your small intestine—a narrow, tube-shaped bridge between the stomach and colon. Normally, only small crowds (bacteria in low numbers) occupy this space. But with SIBO, the population explodes, and these bacteria release a cocktail of gases: hydrogen and/or methane. This results from breaking down carbohydrates during digestion. Sound familiar? Yes, these gases are the reason behind intestinal distension, those infamous bloating bouts, and enough flatulence to power a small car. Professor Louis Buscail, head of gastroenterology and nutrition at Rangueil Hospital in Toulouse, is clear: it’s these gases we can thank for such noisy—and uncomfortable—digestive woes.

But SIBO doesn’t always stop there. Those same bacteria can transform bile acids and digested fats in the small intestine into powerful laxatives. The result? Unpredictable journeys to the bathroom, courtesy of diarrhea, that leave you longing for calmer digestive days. Fatigue and occasional weight loss can pile on, making daily life feel even less rosy.

Why Does This Happen? Blame the Traffic Jam

So why does this bacterial uprising occur? The main suspect: slowed movement in your small intestine. When your gut’s natural conveyor belt creeps along, digestive waste gets held up and starts to ferment. Several troublemakers are known to gum up the works:

  • Surgical procedures—removing parts of the intestine, colon, or pancreas, or having a gastric bypass for obesity
  • Diabetes
  • Parkinson’s disease
  • Certain medications (especially morphine-related drugs)
  • A narrowing of the intestinal wall, which can form a pocket (a “loop”) that never quite empties and invites bacteria to multiply
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So, if your gut’s commute is forever on “slow mode,” you might be unwittingly hosting a bacterial block party—with all the unpleasant trimmings.

Diagnosis: Not Just a Gut Feeling

The workhorse here is the so-called breath test. It’s less glamorous than a detective’s magnifying glass, but far more precise. Here’s how it goes: you drink a glucose solution on an empty stomach, and then, every fifteen minutes, you huff a bit of breath into a tube connected to a computer. This clever device analyzes your breath for hydrogen and methane (the two headline gases of SIBO fermentation). If there’s a spike? SIBO’s likely. For IBS sufferers, this spike is a no-show.

The process takes about three hours and (good news!) is covered by national health insurance. But before you charge into the nearest clinic, know that only certain hospitals are set up for this test. Centers in cities like Caen, Rouen, Bordeaux, Montpellier, Nice, Lyon, Paris (La Pitié-Salpêtrière), and Bobigny (Avicenne) can get you sorted.

Treatment: Knock Out the Bacteria, But Watch for Sneaky Returns

The go-to weapon is a course of broad-spectrum antibiotics: metronidazole or amoxicillin/clavulanic acid, taken orally over ten days. Some hospital preparations might use colimycin or gentamicin (still oral). This antibiotic blitz cuts the bacterial ranks and brings sweet digestive relief. But—and this is a big but—it doesn’t tackle the underlying cause. Professor Buscail warns: relapses can pop up a few weeks later, meaning some people may need repeated courses. For about a third of patients, periodic treatments become the norm.

Thankfully, SIBO is often a fleeting invader, and once antibiotics have swept through, it usually bows out, leaving you (and your gut) in peace—at least until next time.

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And while talk of food intolerances (like those pesky FODMAPs found in cereals, artichokes, asparagus, apples, melons, legumes, and dairy) often float around any discussion of bloating, there’s no direct link with SIBO. Still, embracing a diet low in fermentable sugars can genuinely boost digestive comfort, according to Professor Buscail.

Bottom line? Chronic bloating and digestive troubles might look like IBS or a food intolerance, but SIBO could be the real sneaky cause. When in doubt—and especially if standard fixes aren’t working—ask your doctor about SIBO and the breath test. Your gut (and everyone else in the room) may thank you.

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